Links

Protocols:

Molecular biology protocols

http://www.horizonpress.com/gateway/protocols.html

Cold Spring Harbor protocols (Recipes)

http://www.cshprotocols.org/recipes

       

Biology Tools:

Primer design

http://frodo.wi.mit.edu/cgi-bin/primer3/primer3.cgi

Inversion-complementation of a nucleic sequence

http://bioinfo.hku.hk/services/analyseq/cgi-bin/invcomp_in.pl

ExPASy proteomics tools

http://ca.expasy.org/tools/

Homology modeling (SwissModel)

http://swissmodel.expasy.org/SWISS-MODEL.html

Sequence analysis, structure and function prediction of a protein of interest

http://www.predictprotein.org/

Signal peptide cleavage site prediction

http://www.cbs.dtu.dk/services/SignalP/

       

Chemistry tools:

Molecular property explorer

http://www.organic-chemistry.org/prog/peo/

Synthetic Organic laboratory Techniques

http://chem.chem.rochester.edu/~nvd/

       

Databases:

Codon usage

http://www.kazusa.or.jp/codon/

PDB:the Protein data bank

http://www.rcsb.org/pdb/home/home.do

Pathway database

http://www.genome.ad.jp/kegg/pathway.html

Schistosoma mansoni GeneDB

http://www.genedb.org/genedb/smansoni/

Carbohydrate active enzymes

http://www.cazy.org/

Glycan Binding Proteins

http://www.functionalglycomics.org/glycomics/molecule/jsp/gbpMolecule-home.jsp

Evans pKa table

http://www2.lsdiv.harvard.edu/labs/evans/pdf/evans_pKa_table.pdf

Name reactions

http://www.organic-chemistry.org/namedreactions

Therapeutic target database

http://xin.cz3.nus.edu.sg/group/cjttd/ttd.asp

Zinc (a free database of commercially-available compounds for virtual screening)

http://zinc.docking.org/index.shtml